Quickstart

Execute workflow: Test your configuration by performing a dry-run via snakemake -n

Execute the workflow locally via

• snakemake –cores num_cores

where num_cores are the number of available cores on your machine e.g. 4

or run it in a cluster environment such as snakemake –use-conda –cluster qsub –jobs 100

Further information on running snakemake in different cluster environments can be found on the snakemake website https://snakemake.readthedocs.io/en/stable/